Package: clusteredMSM Type: Package Title: Nonparametric Analysis of Clustered Multistate Processes Version: 0.1.0 Authors@R: person(given = "Giorgos", family = "Bakoyannis", role = c("aut", "cre"), email = "gbakogia@iu.edu", comment = c(ORCID = "0000-0002-2789-2497")) Description: Nonparametric estimation of population-averaged transition probabilities, with cluster-bootstrap pointwise confidence intervals, simultaneous confidence bands, and two-sample Kolmogorov-Smirnov-type tests for clustered or independent multistate process data. Estimation follows Bakoyannis (2021) ; two-sample inference for the cluster-randomized and independent-samples designs follows Bakoyannis and Bandyopadhyay (2022) . Both methods use the working-independence Aalen-Johansen estimator. The package supports both progressive (acyclic) and non-monotone (e.g., illness-death with recovery) multistate processes, right censoring, left truncation, and informative cluster size. The user supplies data in interval format (one row per mutually-exclusive time interval per subject) and interacts with the package through a single formula-based function, patp(). License: GPL-3 Encoding: UTF-8 LazyData: true Depends: R (>= 3.5.0) Imports: survival, stats, utils Suggests: mstate, testthat (>= 3.0.0), knitr, rmarkdown VignetteBuilder: knitr Config/testthat/edition: 3 URL: https://github.com/gbakoyannis/clusteredMSM BugReports: https://github.com/gbakoyannis/clusteredMSM/issues Config/roxygen2/version: 8.0.0 RoxygenNote: 7.3.3 Repository: https://gbakoyannis.r-universe.dev Date/Publication: 2026-05-20 02:02:38 UTC RemoteUrl: https://github.com/gbakoyannis/clusteredmsm RemoteRef: HEAD RemoteSha: 96de6d1225090939789054df72da4190b1cb713c NeedsCompilation: no Packaged: 2026-10-24 08:59:59 UTC; root Author: Giorgos Bakoyannis [aut, cre] (ORCID: ) Maintainer: Giorgos Bakoyannis